LigRMSD: A web server for automatic structure matching and RMSD calculations among identical and similar compounds in protein-ligand docking
3D viewer superposition
Results
| RMSD | Percent of ref match | Percent of molecule match |
|---|---|---|
|
5.36
|
91.67
|
50.00
|
Visualization
| Reference | Molecule |
|
|
|
| Line Number | Reference MTA Elements | X | Y | Z | Molecule SAG Elements | X | Y | Z |
|---|---|---|---|---|---|---|---|---|
| 1 | C | 52.089 | 155.236 | 25.597 | C | 52.857 | 157.331 | 27.054 |
| 2 | C | 52.231 | 154.004 | 26.229 | C | 52.361 | 156.026 | 27.223 |
| 3 | C | 51.676 | 153.845 | 27.584 | C | 52.726 | 154.996 | 26.501 |
| 4 | C | 52.437 | 154.509 | 28.823 | N | 53.601 | 155.168 | 25.738 |
| 5 | N | 53.837 | 154.546 | 28.739 | C | 53.865 | 154.193 | 24.69 |
| 6 | C | 52.961 | 153.035 | 25.561 | C | 51.417 | 155.807 | 28.228 |
| 7 | C | 53.617 | 153.305 | 24.369 | C | 50.971 | 156.847 | 29.047 |
| 8 | C | 53.571 | 154.587 | 23.883 | C | 51.463 | 158.139 | 28.885 |
| 9 | C | 52.826 | 155.583 | 24.464 | C | 52.415 | 158.377 | 27.882 |
| 10 | S | 54.681 | 155.092 | 22.531 | O | 50.983 | 159.132 | 29.727 |
| 11 | C | 55.17 | 156.792 | 23.136 | C | 51.236 | 160.533 | 29.537 |