LigRMSD: A web server for automatic structure matching and RMSD calculations among identical and similar compounds in protein-ligand docking
3D viewer superposition
Results
| RMSD | Percent of ref match | Percent of molecule match |
|---|---|---|
|
0.72
|
40.00
|
40.00
|
Visualization
| Reference | Molecule |
|
|
|
| Line Number | Reference 3ldx_referencia Elements | X | Y | Z | Molecule 2r2m_docking Elements | X | Y | Z |
|---|---|---|---|---|---|---|---|---|
| 1 | C | 17.9099 | -15.4898 | 22.9676 | C | 17.9433 | -15.429 | 23.1178 |
| 2 | N | 17.2427 | -16.1375 | 23.9915 | N | 17.3713 | -16.1557 | 24.0919 |
| 3 | C | 17.6952 | -17.3751 | 24.6271 | C | 18.0286 | -17.1784 | 24.9023 |
| 4 | C | 18.3963 | -17.1041 | 25.9646 | C | 18.7655 | -16.6021 | 26.133 |
| 5 | F | 17.4787 | -16.5582 | 26.8135 | F | 17.9732 | -15.6966 | 26.7145 |
| 6 | C | 19.6276 | -16.2418 | 25.8177 | C | 20.1536 | -16.0234 | 25.8533 |
| 7 | C | 19.6021 | -14.897 | 26.1724 | C | 20.3946 | -14.6301 | 25.9082 |
| 8 | C | 20.7244 | -14.1054 | 26.0186 | C | 21.6795 | -14.1209 | 25.6469 |
| 9 | C | 21.889 | -14.6442 | 25.5097 | C | 22.7378 | -14.9889 | 25.3139 |
| 10 | C | 21.9297 | -15.9784 | 25.1573 | C | 22.5083 | -16.3775 | 25.2841 |
| 11 | C | 20.8092 | -16.7726 | 25.3117 | C | 21.2247 | -16.8913 | 25.545 |
| 12 | F | 18.6988 | -18.3133 | 26.515 | F | 18.9129 | -17.6048 | 27.0014 |