LigRMSD: A web server for automatic structure matching and RMSD calculations among identical and similar compounds in protein-ligand docking
3D viewer superposition
Results
| RMSD | Percent of ref match | Percent of molecule match |
|---|---|---|
|
1.84
|
60.00
|
66.67
|
Visualization
| Reference | Molecule |
|
|
|
| Line Number | Reference 3ldx_referencia Elements | X | Y | Z | Molecule 1t4v_docking Elements | X | Y | Z |
|---|---|---|---|---|---|---|---|---|
| 1 | N | 17.2427 | -16.1375 | 23.9915 | C | 18.192 | -16.1726 | 23.0957 |
| 2 | C | 17.9099 | -15.4898 | 22.9676 | C | 18.1407 | -14.9717 | 22.1943 |
| 3 | N | 18.9476 | -15.9792 | 22.3569 | C | 19.2995 | -14.5558 | 21.4941 |
| 4 | C | 19.499 | -15.2317 | 21.3551 | C | 19.2084 | -13.5134 | 20.5542 |
| 5 | C | 19.0656 | -14.04 | 20.9303 | C | 17.9778 | -12.9094 | 20.3014 |
| 6 | N | 17.9676 | -13.4704 | 21.5413 | C | 16.8257 | -13.2816 | 20.9972 |
| 7 | C | 17.3479 | -14.1271 | 22.591 | C | 16.9009 | -14.3342 | 21.9418 |
| 8 | C | 17.4266 | -12.1609 | 21.158 | O | 15.7122 | -12.5488 | 20.6793 |
| 9 | C | 16.09 | -12.3539 | 20.4636 | C | 14.4957 | -12.8205 | 21.333 |
| 10 | N | 15.2495 | -11.2694 | 20.6338 | C | 13.5788 | -11.6531 | 20.956 |
| 11 | C | 13.8795 | -11.2584 | 20.1541 | C | 12.1711 | -11.8333 | 21.5015 |
| 12 | C | 12.9477 | -10.6323 | 21.1802 | O | 12.2471 | -11.9123 | 22.9095 |
| 13 | O | 12.9276 | -11.4556 | 22.353 | N | 11.3711 | -12.8962 | 23.3897 |
| 14 | N | 12.1784 | -10.817 | 23.3023 | C | 10.7112 | -12.4432 | 24.4652 |
| 15 | C | 11.2376 | -11.5078 | 24.0378 | N | 10.5711 | -11.1369 | 24.7127 |
| 16 | C | 17.6952 | -17.3751 | 24.6271 | N | 19.0755 | -16.2325 | 24.1312 |
| 17 | C | 18.3963 | -17.1041 | 25.9646 | C | 19.2565 | -17.521 | 24.8371 |
| 18 | F | 18.6988 | -18.3133 | 26.515 | C | 20.1677 | -18.5015 | 24.1025 |