LigRMSD: A web server for automatic structure matching and RMSD calculations among identical and similar compounds in protein-ligand docking
3D viewer superposition
Results
| RMSD | Percent of ref match | Percent of molecule match |
|---|---|---|
|
1.33
|
100.00
|
100.00
|
Visualization
| Reference | Molecule |
|
|
|
| Line Number | Reference 1t4v_reference Elements | X | Y | Z | Molecule 1t4v_docking Elements | X | Y | Z |
|---|---|---|---|---|---|---|---|---|
| 1 | Cl | 20.038 | -12.982 | 19.978 | Cl | 20.5711 | -12.9345 | 19.6874 |
| 2 | C | 18.75 | -13.569 | 20.911 | C | 19.2084 | -13.5134 | 20.5542 |
| 3 | C | 17.466 | -12.973 | 20.841 | C | 17.9778 | -12.9094 | 20.3014 |
| 4 | C | 16.431 | -13.482 | 21.642 | C | 16.8257 | -13.2816 | 20.9972 |
| 5 | O | 15.153 | -12.945 | 21.627 | O | 15.7122 | -12.5488 | 20.6793 |
| 6 | C | 14.937 | -11.908 | 20.676 | C | 14.4957 | -12.8205 | 21.333 |
| 7 | C | 13.439 | -11.716 | 20.568 | C | 13.5788 | -11.6531 | 20.956 |
| 8 | C | 12.875 | -10.733 | 21.619 | C | 12.1711 | -11.8333 | 21.5015 |
| 9 | O | 12.932 | -11.315 | 22.941 | O | 12.2471 | -11.9123 | 22.9095 |
| 10 | N | 11.95 | -12.18 | 23.223 | N | 11.3711 | -12.8962 | 23.3897 |
| 11 | C | 11.038 | -11.963 | 24.139 | C | 10.7112 | -12.4432 | 24.4652 |
| 12 | N | 10.221 | -12.942 | 24.494 | N | 10.1711 | -13.3331 | 25.2874 |
| 13 | N | 10.899 | -10.742 | 24.642 | N | 10.5711 | -11.1369 | 24.7127 |
| 14 | C | 16.701 | -14.566 | 22.486 | C | 16.9009 | -14.3342 | 21.9418 |
| 15 | C | 17.968 | -15.109 | 22.525 | C | 18.1407 | -14.9717 | 22.1943 |
| 16 | C | 18.968 | -14.625 | 21.74 | C | 19.2995 | -14.5558 | 21.4941 |
| 17 | C | 18.257 | -16.27 | 23.398 | C | 18.192 | -16.1726 | 23.0957 |
| 18 | O | 17.459 | -17.203 | 23.297 | O | 17.4224 | -17.0981 | 22.8323 |
| 19 | N | 19.256 | -16.348 | 24.308 | N | 19.0755 | -16.2325 | 24.1312 |
| 20 | C | 19.299 | -17.503 | 25.269 | C | 19.2565 | -17.521 | 24.8371 |
| 21 | C | 18.034 | -17.851 | 26.068 | C | 20.1677 | -18.5015 | 24.1025 |
| 22 | C | 18.023 | -18.32 | 27.302 | C | 20.8345 | -18.292 | 22.9535 |
| 23 | C | 19.783 | -15.007 | 24.668 | C | 19.8055 | -15.0611 | 24.6752 |
| 24 | C | 21.305 | -15.149 | 24.549 | C | 21.3227 | -15.2558 | 24.7834 |
| 25 | C | 21.979 | -14.542 | 25.718 | C | 21.7712 | -14.2052 | 25.8075 |
| 26 | C | 20.915 | -14.431 | 26.797 | C | 20.5245 | -13.8067 | 26.6187 |
| 27 | C | 19.623 | -14.914 | 26.187 | C | 19.3653 | -14.661 | 26.0892 |