LigRMSD: A web server for automatic structure matching and RMSD calculations among identical and similar compounds in protein-ligand docking
3D viewer superposition
Results
| RMSD | Percent of ref match | Percent of molecule match |
|---|---|---|
|
0.32
|
40.00
|
40.00
|
Visualization
| Reference | Molecule |
|
|
|
| Line Number | Reference 2r2m_reference Elements | X | Y | Z | Molecule 3ldx_docking Elements | X | Y | Z |
|---|---|---|---|---|---|---|---|---|
| 1 | C | 18.01 | -15.482 | 23.083 | C | 17.9601 | -15.5042 | 23.0395 |
| 2 | N | 17.349 | -16.196 | 24.172 | N | 17.3714 | -16.1155 | 24.0867 |
| 3 | C | 17.992 | -17.4 | 24.685 | C | 17.9267 | -17.2404 | 24.8582 |
| 4 | C | 18.595 | -17.103 | 26.071 | C | 18.5644 | -16.7772 | 26.1838 |
| 5 | C | 19.858 | -16.229 | 25.915 | C | 19.8152 | -15.917 | 26.0178 |
| 6 | C | 21.088 | -16.797 | 25.493 | C | 20.9759 | -16.4624 | 25.4259 |
| 7 | C | 22.229 | -15.983 | 25.34 | C | 22.1321 | -15.6741 | 25.2622 |
| 8 | C | 22.147 | -14.589 | 25.597 | C | 22.1363 | -14.3324 | 25.6871 |
| 9 | C | 20.916 | -14.02 | 26.016 | C | 20.9859 | -13.7815 | 26.2834 |
| 10 | C | 19.777 | -14.832 | 26.172 | C | 19.835 | -14.5725 | 26.4501 |
| 11 | F | 17.669 | -16.436 | 26.825 | F | 17.6378 | -16.1296 | 26.8935 |
| 12 | F | 18.883 | -18.303 | 26.648 | F | 18.9069 | -17.8665 | 26.8724 |