LigRMSD: A web server for automatic structure matching and RMSD calculations among identical and similar compounds in protein-ligand docking
3D viewer superposition
Results
| RMSD | Percent of ref match | Percent of molecule match |
|---|---|---|
|
1.56
|
66.67
|
60.00
|
Visualization
| Reference | Molecule |
|
|
|
| Line Number | Reference 1t4v_reference Elements | X | Y | Z | Molecule 2r2m_docking Elements | X | Y | Z |
|---|---|---|---|---|---|---|---|---|
| 1 | N | 10.221 | -12.942 | 24.494 | C | 10.7096 | -12.247 | 24.3027 |
| 2 | C | 11.038 | -11.963 | 24.139 | N | 11.3687 | -12.3183 | 23.1252 |
| 3 | N | 11.95 | -12.18 | 23.223 | O | 12.3359 | -13.3293 | 23.1508 |
| 4 | O | 12.932 | -11.315 | 22.941 | C | 12.4482 | -13.9923 | 21.891 |
| 5 | C | 12.875 | -10.733 | 21.619 | C | 13.0045 | -13.0935 | 20.7574 |
| 6 | C | 13.439 | -11.716 | 20.568 | N | 14.375 | -12.687 | 21.0587 |
| 7 | C | 14.937 | -11.908 | 20.676 | C | 15.4698 | -12.9504 | 20.328 |
| 8 | O | 15.153 | -12.945 | 21.627 | C | 16.8141 | -12.4847 | 20.9109 |
| 9 | C | 16.431 | -13.482 | 21.642 | C | 17.6857 | -13.6083 | 21.4823 |
| 10 | C | 17.466 | -12.973 | 20.841 | C | 19.0028 | -13.8662 | 21.025 |
| 11 | C | 18.75 | -13.569 | 20.911 | C | 19.7634 | -14.8997 | 21.597 |
| 12 | C | 18.968 | -14.625 | 21.74 | C | 19.235 | -15.692 | 22.6289 |
| 13 | C | 17.968 | -15.109 | 22.525 | C | 17.9433 | -15.429 | 23.1178 |
| 14 | C | 16.701 | -14.566 | 22.486 | C | 17.1742 | -14.3947 | 22.5403 |
| 15 | C | 18.257 | -16.27 | 23.398 | N | 17.3713 | -16.1557 | 24.0919 |
| 16 | N | 19.256 | -16.348 | 24.308 | C | 18.0286 | -17.1784 | 24.9023 |
| 17 | C | 19.299 | -17.503 | 25.269 | C | 18.7655 | -16.6021 | 26.133 |
| 18 | C | 18.034 | -17.851 | 26.068 | F | 18.9129 | -17.6048 | 27.0014 |